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SRX114410: 1000 Genomes Low Coverage Sequencing
8 ILLUMINA (Illumina HiSeq 2000) runs: 18M spots, 3.8G bases, 2.5Gb downloads

Design: Low Pass Illumina Whole Genome sequencing
Submitted by: Broad Institute (BI)
Study: Whole genome sequencing of (KHV) Kinh in Ho Chi minh City, Vietnam HapMap population
PRJNA42575 • SRP001516 • All experiments • All runs
show Abstracthide Abstract
<P> The purpose of the project is to support the discovery and understanding of genetic variants that influence human disease. DNA for the KHV Kinh in Ho Chi minh City, Vietnam. DNA for sequencing was extracted from lymphoblastoid cell line.
Sample: Coriell HG01869
SAMN00249843 • SRS179168 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: Sage-68947
Instrument: Illumina HiSeq 2000
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Spot descriptor:
1  forward barcode
Group tagBasecalls
tagged_869TCGGAATG
110  reverse

Experiment attributes: (show all 4 attributes...) (hide...)
4 BI attributes: (show...)(hide...)
BI GSSR sample ID: 120583.0
BI GSSR sample LSID: broadinstitute.org:bsp.prod.sample:25MUC
BI project name: G14519
BI work request ID: 26160
Pipeline: show...hide...
NameStepProgramVersion
base caller2011-10-01 14:50:27.0GAPipelineRTA1.12.4.2
Runs: 8 runs, 18M spots, 3.8G bases, 2.5Gb
Run# of Spots# of BasesSizePublished
SRR3960191,908,773400.8M252.9Mb2012-01-04
SRR3960242,294,192481.8M327.7Mb2012-01-04
SRR3960382,093,001439.5M284.5Mb2012-01-04
SRR3960802,320,869487.4M329.6Mb2012-01-04
SRR3960862,218,406465.9M312.7Mb2012-01-04
SRR3960932,243,535471.1M310.9Mb2012-01-04
SRR3960972,537,157532.8M349.5Mb2012-01-04
SRR3961922,424,454509.1M346.3Mb2012-01-05

ID:
132163

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